Load data to be deconvoluted into a DigitalDLSorter object

Load data to be deconvoluted. Data can be provided from a file path of a tabulated text file (tsv and tsv.gz formats are accepted) or a SummarizedExperiment object.

loadDeconvData(object, data, name.data = NULL)

# S4 method for DigitalDLSorter,character
loadDeconvData(object, data, name.data = NULL)

# S4 method for DigitalDLSorter,SummarizedExperiment
loadDeconvData(object, data, name.data = NULL)

Arguments

object

DigitalDLSorter object with trained.model slot.

data

File path where the data is stored or a SummarizedExperiment object.

name.data

Name under which the data is stored in the DigitalDLSorter object. When data is a file path and name.data is not provided, the base name of file will be used.

Value

A DigitalDLSorter object with deconv.data

slot with the new bulk-RNA-Seq samples loaded.

See also

trainDDLSModel deconvDDLSObj