Plot distances between intrinsic and extrinsic profiles — plotDistances • SpatialDDLS

Color spots on the spatial coordinates according to distances between intrinsic and extrinsic transcriptional profiles.

Usage

plotDistances(
  object,
  index.st,
  mid.scale = "mean",
  size.point = 1,
  title = NULL,
  theme = NULL
)

Arguments

object: A SpatialDDLS object.
index.st: Index of the spatial transcriptomics data to be plotted. It can be either a position or a name if a named list was provided.
mid.scale: The midpoint of the diverging scale. it may be 'mean' or 'median' (the former by default).
size.point: Size of points (0.1 by default).
title: Title of plot.
theme: ggplot2 theme.

Value

A ggplot object.

See also

deconvSpatialDDLS trainDeconvModel