Bar plot of deconvoluted cell type proportions

Bar plot of deconvoluted cell type proportions.

Usage

barPlotCellTypes(
  data,
  colors = NULL,
  set = NULL,
  prediction = "Regularized",
  color.line = NA,
  x.label = "Spots",
  rm.x.text = FALSE,
  title = "Results of deconvolution",
  legend.title = "Cell types",
  angle = 90,
  theme = NULL,
  index.st = NULL
)

Arguments

data: SpatialDDLS object with the deconv.spots slot containing predicted cell type proportions.
colors: Vector of colors to be used.
set: Type of simplification performed during deconvolution. It can be simpli.set or simpli.maj (NULL by default).
prediction: Set of predicted cell proportions to be plotted. It can be "Regularized", "Intrinsic" or "Extrinsic".
color.line: Color of the border bars.
x.label: Label of x-axis.
rm.x.text: Logical value indicating whether to remove x-axis ticks (name of samples).
title: Title of the plot.
legend.title: Title of the legend plot.
angle: Angle of text ticks.
theme: ggplot2 theme.
index.st: Name or index of the element wanted to be shown in the deconv.spots slot.

Value

A ggplot object with the provided cell proportions represented as a bar plot.

Usage

Arguments

Value

See also